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Calling Sequence
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MOIntegrals(molecule, options)
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Parameters
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molecule
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list of lists; each list has 4 elements, the string of an atom's symbol and atom's x, y, and z coordinates
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options
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(optional) equation(s) of the form option = value where option is one of basis, active, initial_mo, spin, charge, symmetry, frozen, unit, max_memory, conv_tol, diis, diis_space, diis_start_cycle, direct_scf, direct_scf_tol, level_shift_factor, max_cycle, nuclear_gradient, populations
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Description
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The MOIntegrals command generates the one- and two-electron integrals in the Hartree-Fock molecular-orbital basis set (default) or another molecular-orbital basis set specified by the optional keyword initial_mo.
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If the active keyword is not specified, the output is a table of the following electron integrals: kinetic energy integrals, nuclear attraction integrals, overlap integrals, and electron repulsion integrals in chemistry notation ([ij,kl]) as well as the nuclear energy.
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If the active keyword is specified, the output is a table of the following electron integrals: one-electron integrals and electron repulsion integrals in chemistry notation ([ij,kl]) as well as the nuclear and core energies. Note that the core energy contains the energy of the core electrons as well as the nuclear energy.
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The nuclear attraction integrals, kinetic energy integrals, and overlap integrals are one-electron integrals, and hence, they are returned as r×r matrices where r is the number of orbitals.
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The electron repulsion integrals are organized in chemistry notation ([ij,kl]) with only independent symmetric elements for both ij and kl pairs (i≥j and k≥l). For r orbitals the electron repulsion integrals are returned as a (r×(r+1)/2)×(r×(r+1)/2) Matrix M whose elements are given by M[k(k-1)/2+l,i(i-1)/2+j].
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Outputs
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The table has the following contents:
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Matrix -- electron repulsion integrals
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Matrix -- nuclear attraction integrals
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Matrix -- kinetic energy integrals
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Matrix -- overlap integrals
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float -- nuclear energy
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or with the active keyword given
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Matrix -- electron repulsion integrals
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Matrix -- nuclear attraction integrals
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float -- core energy including nuclear energy
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float -- nuclear energy
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Options
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basis = string -- name of the basis set. See Basis for a list of available basis sets. Default is "sto-3g".
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active = list -- [number of electrons, number of active orbitals]
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initial_mo = list -- the basis of molecular orbitals (MOs) for the electron integrals can be specified as a list: [ t[mo_coeff], t[mo_symmetry] ] where t[mo_coeff] is the Matrix of MOs (columns) in terms of atomic orbitals (rows) and t[mo_symmetry] is the Vector of MO symmetries (see HartreeFock output). If the keyword initial_mo is not given, then the electron integrals are computed with the Hartree-Fock MOs.
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spin = nonnegint -- twice the total spin S (= 2S). Default is 0.
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charge = nonnegint -- net charge of the molecule. Default is 0.
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symmetry = string/boolean -- is the Schoenflies symbol of the abelian point-group symmetry which can be one of the following: D2h, C2h, C2v, D2, Cs, Ci, C2, C1. true finds the appropriate symmetry while false (default) does not use symmetry.
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ghost = list of lists -- each list has the string of an atom's symbol and the atom's x, y, and z coordinates. See Ghost Atoms.
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unit = string -- "Angstrom" or "Bohr". Default is "Angstrom".
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max_memory = posint -- allowed memory in MB. Default is 4000.
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nuclear_gradient = boolean -- option to return the analytical nuclear gradient if available. Default is false.
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populations = string -- atomic-orbital population analysis: "Mulliken" and "Mulliken/meta-Lowdin". Default is "Mulliken".
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conv_tol = float -- converge threshold. Default is
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diis = boolean -- whether to employ diis. Default is true.
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diis_space = posint -- diis's space size. By default, 8 Fock matrices and error vectors are stored.
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diis_start_cycle = posint -- the step to start diis. Default is 1.
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direct_scf = boolean -- direct SCF in which integrals are recomputed is used by default.
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direct_scf_tol = float -- direct SCF cutoff threshold. Default is
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level_shift = float/int -- level shift (in au) for virtual space. Default is
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max_cycle = posint -- max number of iterations. Default is 50.
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frozen = set -- set of Hartree-Fock molecular orbitals to be frozen.
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